Review



h3k4me1  (Cell Signaling Technology Inc)


Bioz Verified Symbol Cell Signaling Technology Inc is a verified supplier
Bioz Manufacturer Symbol Cell Signaling Technology Inc manufactures this product  
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
  • 96

    Structured Review

    Cell Signaling Technology Inc h3k4me1
    596 interacts with LSD1 in EC Cells. (A). The molecular structure of 596. (B). Western blot detection of <t>H3K4me1,</t> H3K4me2, and H3K4me3 after 596(0,4,8,12,16 μM) treatment( n = 3). (C-D). After treating ISK and HEC1A cells with DMSO and 596 (12 μM) for 2 h, the thermal stability of LSD1 was detected by CETSA method. The quantitation (right) of western blot results. (E). In ISK and HEC1A cells, detect the proliferation of compound 596 after 48–96 h of different concentrations by CCK8. (F-G). GraphPad Prism 9 was used to calculate IC50 of 596 in ISK and HEC1A cells. (H). ISK cells and HEC1A cells were treated with different concentrations of 596 respectively, and the proliferation of the cells was detected by colony formation assay.
    H3k4me1, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 96/100, based on 257 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/h3k4me1/Mono-Methyl-Histone+H3+(Lys4)+XP+Rabbit+mAb/pmc12914821-46-43-45
    Average 96 stars, based on 257 article reviews
    h3k4me1 - by Bioz Stars, 2026-10
    96/100 stars

    Images

    1) Product Images from "The novel tertiary amine LSD1 inhibitor 596 inhibits endometrial cancer through the mTOR signal transduction pathway"

    Article Title: The novel tertiary amine LSD1 inhibitor 596 inhibits endometrial cancer through the mTOR signal transduction pathway

    Journal: Translational Oncology

    doi: 10.1016/j.tranon.2026.102688

    596 interacts with LSD1 in EC Cells. (A). The molecular structure of 596. (B). Western blot detection of H3K4me1, H3K4me2, and H3K4me3 after 596(0,4,8,12,16 μM) treatment( n = 3). (C-D). After treating ISK and HEC1A cells with DMSO and 596 (12 μM) for 2 h, the thermal stability of LSD1 was detected by CETSA method. The quantitation (right) of western blot results. (E). In ISK and HEC1A cells, detect the proliferation of compound 596 after 48–96 h of different concentrations by CCK8. (F-G). GraphPad Prism 9 was used to calculate IC50 of 596 in ISK and HEC1A cells. (H). ISK cells and HEC1A cells were treated with different concentrations of 596 respectively, and the proliferation of the cells was detected by colony formation assay.
    Figure Legend Snippet: 596 interacts with LSD1 in EC Cells. (A). The molecular structure of 596. (B). Western blot detection of H3K4me1, H3K4me2, and H3K4me3 after 596(0,4,8,12,16 μM) treatment( n = 3). (C-D). After treating ISK and HEC1A cells with DMSO and 596 (12 μM) for 2 h, the thermal stability of LSD1 was detected by CETSA method. The quantitation (right) of western blot results. (E). In ISK and HEC1A cells, detect the proliferation of compound 596 after 48–96 h of different concentrations by CCK8. (F-G). GraphPad Prism 9 was used to calculate IC50 of 596 in ISK and HEC1A cells. (H). ISK cells and HEC1A cells were treated with different concentrations of 596 respectively, and the proliferation of the cells was detected by colony formation assay.

    Techniques Used: Western Blot, Quantitation Assay, Colony Assay

    Related Articles

    Incubation:

    Article Title: The pan-cancer mutational landscape of MLL3 and its impact on prognosis and immunochemotherapy.
    Article Snippet: .. The ConA bead-cell complexes were then incubated overnight with specific primary antibodies against histone modifications H3K27ac (Abcam, ab4729) and H3K4me1 (Cell Signaling, 5326S). ..

    Article Title: Multidimensional mapping of stimulation-responsive regulatory elements and candidate causal variants in T cell activation
    Article Snippet: Nuclear lysates were sonicated to generate DNA fragments ranging from 200 to 500 bp using a Biorupter system (Diagenode, B01060001) at high energy, with a working time of 30 s and a resting time of 30 s, for a total of 30 cycles, until the solutions became clear. .. After removing insoluble debris, lysates were incubated with specific antibodies against Rabbit IgG (1:100, Cell Signaling Technology, 7074), CTCF (1:100, Abcam, ab128873), ZNF384 (1:100, Novus Biologicals, NBP3-30592), H3K27me3 (1:100, Cell Signaling Technology, 9733), Rpb1 NTD (1:100, Cell Signaling Technology, 14958), H3K4me1 (1:100, Cell Signaling Technology, 5326), H3K4me3 (1:100, Cell Signaling Technology, 9751), or H3K27ac (1:100, Abcam, ab4729). .. Antibody-bound complexes were purified using protein A–agarose beads (Millipore, 16-157).

    Immunoprecipitation:

    Article Title: High-throughput functional characterization of enhancers in totipotent-like cells
    Article Snippet: .. One microgram of histone H3K27ac (39133, Active Motif), H3K4me1 (5326S, Cell Signaling Technology) or H3K4me3 (9751S, Cell Signaling Technology) antibody was used for each immunoprecipitation reaction. .. The sequencing libraries were prepared using the NEBNext ® UltraTM II DNA Library Prep Kit for Illumina ® (E7645S, NEB) and the NEBNext ® Multiplex Oligos for Illumina ® (Index Primers Set 1) (E7335S, NEB) following the manufacturer’s instructions.

    Article Title: Time-resolved multiomics profiling reveals chromatin O-GlcNAc modification promotes senescence-associated transcriptional program.
    Article Snippet: .. After pre-clearing with vehicle-coated magnetic beads, chromatin complexes were immunoprecipitated with either anti-Flag magnetic beads, anti-HA magnetic beads, or antibodies against histone modifications, including H3K27me3 (CST, #9733, 1:50), H3K27ac (CST, #8173, 1:50), H3K4me1 (CST, #5326, 1:50), or H3K4me3 (CST, #9751, 1:50). ..

    Article Title: Time-resolved multiomics profiling reveals chromatin O-GlcNAc modification promotes senescence-associated transcriptional program
    Article Snippet: .. After pre-clearing with vehicle-coated magnetic beads, chromatin complexes were immunoprecipitated with either anti-Flag magnetic beads, anti-HA magnetic beads, or antibodies against histone modifications, including H3K27me3 (CST, #9733, 1:50), H3K27ac (CST, #8173, 1:50), H3K4me1 (CST, #5326, 1:50), or H3K4me3 (CST, #9751, 1:50). ..

    Magnetic Beads:

    Article Title: Time-resolved multiomics profiling reveals chromatin O-GlcNAc modification promotes senescence-associated transcriptional program.
    Article Snippet: .. After pre-clearing with vehicle-coated magnetic beads, chromatin complexes were immunoprecipitated with either anti-Flag magnetic beads, anti-HA magnetic beads, or antibodies against histone modifications, including H3K27me3 (CST, #9733, 1:50), H3K27ac (CST, #8173, 1:50), H3K4me1 (CST, #5326, 1:50), or H3K4me3 (CST, #9751, 1:50). ..

    Article Title: Time-resolved multiomics profiling reveals chromatin O-GlcNAc modification promotes senescence-associated transcriptional program
    Article Snippet: .. After pre-clearing with vehicle-coated magnetic beads, chromatin complexes were immunoprecipitated with either anti-Flag magnetic beads, anti-HA magnetic beads, or antibodies against histone modifications, including H3K27me3 (CST, #9733, 1:50), H3K27ac (CST, #8173, 1:50), H3K4me1 (CST, #5326, 1:50), or H3K4me3 (CST, #9751, 1:50). ..

    Cell Culture:

    Article Title: The novel tertiary amine LSD1 inhibitor 596 inhibits endometrial cancer through the mTOR signal transduction pathway.
    Article Snippet: .. The EC cells were cultured in DMEM medium(Viva cell, China) containing 10% fetal bovine serum (Viva cell, China) at 37◦C and 5% CO2.The main purchasing information was listed below:LSD1 (1:10,000, ab129195, Abcam, UK), H3(1:20,000, No.4499T,Cell Signaling Technology, CST, Boston, MA, USA), H3K4me1(1:2000, No.5326T, CST), H3K4me2(1:2000, No.9725S, CST), H3K4me3(1:2000, No. 9751T, CST), p62/SQSTM1(1:2000, No.5114T, CST), LC3B(1:2000, Cat# AF4650, Affinity Biosciences), Beclin-1(1:2000, Cat# AF5128, Affinity Biosciences), AKT(1:5000, YM8463, Immunoway, USK), P-AKT (Ser473)(1:2000, YM8304, Immunoway, USK), mTOR(1:5000,YM8208, Immunoway, USK), P-mTOR(Ser2448)(1:5000, YM8326, Immunoway, USK), S6(1:2000, YT4139, Immunoway, USK), P-S6(1:2000, No.F0198, Selleck.cn), p70S6K(1:2000, YT3559, Immunoway, USK), P-p70S6K (1:1000, No.F2907, Immunoway, USK), GAPDH(1:5000, Proteintech). .. Rapamycin, 3-MA was purchased from MCE and CC9001 was purchased from KKL Med Inc.

    Article Title: The novel tertiary amine LSD1 inhibitor 596 inhibits endometrial cancer through the mTOR signal transduction pathway
    Article Snippet: .. The EC cells were cultured in DMEM medium(Viva cell, China) containing 10% fetal bovine serum (Viva cell, China) at 37°C and 5% CO 2 .The main purchasing information was listed below:LSD1 (1:10,000, ab129195, Abcam, UK), H3(1:20,000, No.4499T,Cell Signaling Technology, CST, Boston, MA, USA), H3K4me1(1:2000, No.5326T, CST), H3K4me2(1:2000, No.9725S, CST), H3K4me3(1:2000, No. 9751T, CST), p62/SQSTM1(1:2000, No.5114T, CST), LC3B(1:2000, Cat# AF4650, Affinity Biosciences), Beclin-1(1:2000, Cat# AF5128, Affinity Biosciences), AKT(1:5000, YM8463, Immunoway, USK), P-AKT(Ser473)(1:2000, YM8304, Immunoway, USK), mTOR(1:5000,YM8208, Immunoway, USK), P-mTOR(Ser2448)(1:5000, YM8326, Immunoway, USK), S6(1:2000, YT4139, Immunoway, USK), P-S6(1:2000, No.F0198, Selleck.cn), p70S6K(1:2000, YT3559, Immunoway, USK), P-p70S6K(1:1000, No.F2907, Immunoway, USK), GAPDH(1:5000, Proteintech). .. Rapamycin, 3-MA was purchased from MCE and CC9001 was purchased from KKL Med Inc.



    Similar Products

    95
    EpiCypher h3k4me1
    H3k4me1, supplied by EpiCypher, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/h3k4me1/H3K4me1+Antibody%2C+SNAP-Certified+for+CUT%26RUN+and+CUT%26Tag/pm42873853-233-36-37
    Average 95 stars, based on 1 article reviews
    h3k4me1 - by Bioz Stars, 2026-10
    95/100 stars
      Buy from Supplier

    93
    Proteintech anti h3k4me1
    Anti H3k4me1, supplied by Proteintech, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/h3k4me1/FOXA1+Antibody/10__1186_slash_s12943___026___02792___6-148-57-58
    Average 93 stars, based on 1 article reviews
    anti h3k4me1 - by Bioz Stars, 2026-10
    93/100 stars
      Buy from Supplier

    95
    ABclonal Biotechnology h3k4me1
    H3k4me1, supplied by ABclonal Biotechnology, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/h3k4me1/MonoMethyl-Histone+H3-K4+Rabbit+pAb/pm42600186-235-8-25
    Average 95 stars, based on 1 article reviews
    h3k4me1 - by Bioz Stars, 2026-10
    95/100 stars
      Buy from Supplier

    96
    Cell Signaling Technology Inc h3k4me1
    596 interacts with LSD1 in EC Cells. (A). The molecular structure of 596. (B). Western blot detection of <t>H3K4me1,</t> H3K4me2, and H3K4me3 after 596(0,4,8,12,16 μM) treatment( n = 3). (C-D). After treating ISK and HEC1A cells with DMSO and 596 (12 μM) for 2 h, the thermal stability of LSD1 was detected by CETSA method. The quantitation (right) of western blot results. (E). In ISK and HEC1A cells, detect the proliferation of compound 596 after 48–96 h of different concentrations by CCK8. (F-G). GraphPad Prism 9 was used to calculate IC50 of 596 in ISK and HEC1A cells. (H). ISK cells and HEC1A cells were treated with different concentrations of 596 respectively, and the proliferation of the cells was detected by colony formation assay.
    H3k4me1, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/h3k4me1/Mono-Methyl-Histone+H3+(Lys4)+XP+Rabbit+mAb/pmc12914821-46-43-45
    Average 96 stars, based on 1 article reviews
    h3k4me1 - by Bioz Stars, 2026-10
    96/100 stars
      Buy from Supplier

    96
    EpiCypher h3k4me1 cut tag
    (A) Genome-wide matrix of topologically associated domains (TADs) shows that most interactions are intrachromosomal (diagonal intensity pattern indicates each chromosome plotted against itself). A unique interaction pattern between chromosomes 1p and 7q (black arrow) was observed in KT-47R1 but not in KT-47PT. (B) Hi-C identified an interchromosomal interaction between chromosome 1p32.3 ( GLIS1 locus) and chromosome 7q21 ( ABCB1 locus, black arrow) in KT-47R1. The light red vertical line marks the boundary between interacting regions of chromosomes 1 (right) and 7 (left). Red arcs indicate interactions between chromosomes 1 and 7 in KT-47R1, absent in KT-47PT (no blue arcs crossing the boundary). RNA-seq reads confirm upregulation of ABCB1 (black arrow) in KT-47R1. (C) CUT&Tag analysis shows <t>H3K4me1</t> peaks within the interacting region of chromosome 1p32.3. Peaks are present in both KT-47PT and KT-47R1, but the chromatin interaction occurs only in KT-47R1. (D) FISH 1p32.3 break-apart analysis demonstrates no translocation involving 1p32.3 in KT-47PT, KT-47 pre-resistance, KT-47R1, or KT-47R2. Scale bars, 5 μm. (E) Chromosome 1 and 7 painting analysis indicated increased interaction (colocalization) between chromosomes 1 and 7 in KT-47R1 (48%) and KT-47R2 (48%) when compared to KT-47PT (19%) and KT-47PR (25%). Scale bars, 10 μm. n = 2 samples per group.
    H3k4me1 Cut Tag, supplied by EpiCypher, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/h3k4me1/CUTANA+CUT%26Tag+Kit/pmc13103949-2-0-3
    Average 96 stars, based on 1 article reviews
    h3k4me1 cut tag - by Bioz Stars, 2026-10
    96/100 stars
      Buy from Supplier

    95
    EpiCypher 0057 rrid ab 3076424
    (A) Genome-wide matrix of topologically associated domains (TADs) shows that most interactions are intrachromosomal (diagonal intensity pattern indicates each chromosome plotted against itself). A unique interaction pattern between chromosomes 1p and 7q (black arrow) was observed in KT-47R1 but not in KT-47PT. (B) Hi-C identified an interchromosomal interaction between chromosome 1p32.3 ( GLIS1 locus) and chromosome 7q21 ( ABCB1 locus, black arrow) in KT-47R1. The light red vertical line marks the boundary between interacting regions of chromosomes 1 (right) and 7 (left). Red arcs indicate interactions between chromosomes 1 and 7 in KT-47R1, absent in KT-47PT (no blue arcs crossing the boundary). RNA-seq reads confirm upregulation of ABCB1 (black arrow) in KT-47R1. (C) CUT&Tag analysis shows <t>H3K4me1</t> peaks within the interacting region of chromosome 1p32.3. Peaks are present in both KT-47PT and KT-47R1, but the chromatin interaction occurs only in KT-47R1. (D) FISH 1p32.3 break-apart analysis demonstrates no translocation involving 1p32.3 in KT-47PT, KT-47 pre-resistance, KT-47R1, or KT-47R2. Scale bars, 5 μm. (E) Chromosome 1 and 7 painting analysis indicated increased interaction (colocalization) between chromosomes 1 and 7 in KT-47R1 (48%) and KT-47R2 (48%) when compared to KT-47PT (19%) and KT-47PR (25%). Scale bars, 10 μm. n = 2 samples per group.
    0057 Rrid Ab 3076424, supplied by EpiCypher, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/h3k4me1/H3K4me1+Antibody%2C+SNAP-Certified+for+CUT%26RUN+and+CUT%26Tag/pmc13103949-2-5-3
    Average 95 stars, based on 1 article reviews
    0057 rrid ab 3076424 - by Bioz Stars, 2026-10
    95/100 stars
      Buy from Supplier

    96
    Cell Signaling Technology Inc anti h3k4me1
    (A) Genome-wide matrix of topologically associated domains (TADs) shows that most interactions are intrachromosomal (diagonal intensity pattern indicates each chromosome plotted against itself). A unique interaction pattern between chromosomes 1p and 7q (black arrow) was observed in KT-47R1 but not in KT-47PT. (B) Hi-C identified an interchromosomal interaction between chromosome 1p32.3 ( GLIS1 locus) and chromosome 7q21 ( ABCB1 locus, black arrow) in KT-47R1. The light red vertical line marks the boundary between interacting regions of chromosomes 1 (right) and 7 (left). Red arcs indicate interactions between chromosomes 1 and 7 in KT-47R1, absent in KT-47PT (no blue arcs crossing the boundary). RNA-seq reads confirm upregulation of ABCB1 (black arrow) in KT-47R1. (C) CUT&Tag analysis shows <t>H3K4me1</t> peaks within the interacting region of chromosome 1p32.3. Peaks are present in both KT-47PT and KT-47R1, but the chromatin interaction occurs only in KT-47R1. (D) FISH 1p32.3 break-apart analysis demonstrates no translocation involving 1p32.3 in KT-47PT, KT-47 pre-resistance, KT-47R1, or KT-47R2. Scale bars, 5 μm. (E) Chromosome 1 and 7 painting analysis indicated increased interaction (colocalization) between chromosomes 1 and 7 in KT-47R1 (48%) and KT-47R2 (48%) when compared to KT-47PT (19%) and KT-47PR (25%). Scale bars, 10 μm. n = 2 samples per group.
    Anti H3k4me1, supplied by Cell Signaling Technology Inc, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/h3k4me1/Mono-Methyl-Histone+H3+(Lys4)+XP+Rabbit+mAb/pm41832971-442-11-12
    Average 96 stars, based on 1 article reviews
    anti h3k4me1 - by Bioz Stars, 2026-10
    96/100 stars
      Buy from Supplier

    95
    EpiCypher resource source identifier h3k4me1 antibody
    (A) Genome-wide matrix of topologically associated domains (TADs) shows that most interactions are intrachromosomal (diagonal intensity pattern indicates each chromosome plotted against itself). A unique interaction pattern between chromosomes 1p and 7q (black arrow) was observed in KT-47R1 but not in KT-47PT. (B) Hi-C identified an interchromosomal interaction between chromosome 1p32.3 ( GLIS1 locus) and chromosome 7q21 ( ABCB1 locus, black arrow) in KT-47R1. The light red vertical line marks the boundary between interacting regions of chromosomes 1 (right) and 7 (left). Red arcs indicate interactions between chromosomes 1 and 7 in KT-47R1, absent in KT-47PT (no blue arcs crossing the boundary). RNA-seq reads confirm upregulation of ABCB1 (black arrow) in KT-47R1. (C) CUT&Tag analysis shows <t>H3K4me1</t> peaks within the interacting region of chromosome 1p32.3. Peaks are present in both KT-47PT and KT-47R1, but the chromatin interaction occurs only in KT-47R1. (D) FISH 1p32.3 break-apart analysis demonstrates no translocation involving 1p32.3 in KT-47PT, KT-47 pre-resistance, KT-47R1, or KT-47R2. Scale bars, 5 μm. (E) Chromosome 1 and 7 painting analysis indicated increased interaction (colocalization) between chromosomes 1 and 7 in KT-47R1 (48%) and KT-47R2 (48%) when compared to KT-47PT (19%) and KT-47PR (25%). Scale bars, 10 μm. n = 2 samples per group.
    Resource Source Identifier H3k4me1 Antibody, supplied by EpiCypher, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/h3k4me1/H3K4me1+Antibody%2C+SNAP-Certified+for+CUT%26RUN+and+CUT%26Tag/pm41785859-255-2-12
    Average 95 stars, based on 1 article reviews
    resource source identifier h3k4me1 antibody - by Bioz Stars, 2026-10
    95/100 stars
      Buy from Supplier

    Image Search Results


    596 interacts with LSD1 in EC Cells. (A). The molecular structure of 596. (B). Western blot detection of H3K4me1, H3K4me2, and H3K4me3 after 596(0,4,8,12,16 μM) treatment( n = 3). (C-D). After treating ISK and HEC1A cells with DMSO and 596 (12 μM) for 2 h, the thermal stability of LSD1 was detected by CETSA method. The quantitation (right) of western blot results. (E). In ISK and HEC1A cells, detect the proliferation of compound 596 after 48–96 h of different concentrations by CCK8. (F-G). GraphPad Prism 9 was used to calculate IC50 of 596 in ISK and HEC1A cells. (H). ISK cells and HEC1A cells were treated with different concentrations of 596 respectively, and the proliferation of the cells was detected by colony formation assay.

    Journal: Translational Oncology

    Article Title: The novel tertiary amine LSD1 inhibitor 596 inhibits endometrial cancer through the mTOR signal transduction pathway

    doi: 10.1016/j.tranon.2026.102688

    Figure Lengend Snippet: 596 interacts with LSD1 in EC Cells. (A). The molecular structure of 596. (B). Western blot detection of H3K4me1, H3K4me2, and H3K4me3 after 596(0,4,8,12,16 μM) treatment( n = 3). (C-D). After treating ISK and HEC1A cells with DMSO and 596 (12 μM) for 2 h, the thermal stability of LSD1 was detected by CETSA method. The quantitation (right) of western blot results. (E). In ISK and HEC1A cells, detect the proliferation of compound 596 after 48–96 h of different concentrations by CCK8. (F-G). GraphPad Prism 9 was used to calculate IC50 of 596 in ISK and HEC1A cells. (H). ISK cells and HEC1A cells were treated with different concentrations of 596 respectively, and the proliferation of the cells was detected by colony formation assay.

    Article Snippet: The EC cells were cultured in DMEM medium(Viva cell, China) containing 10% fetal bovine serum (Viva cell, China) at 37°C and 5% CO 2 .The main purchasing information was listed below:LSD1 (1:10,000, ab129195, Abcam, UK), H3(1:20,000, No.4499T,Cell Signaling Technology, CST, Boston, MA, USA), H3K4me1(1:2000, No.5326T, CST), H3K4me2(1:2000, No.9725S, CST), H3K4me3(1:2000, No. 9751T, CST), p62/SQSTM1(1:2000, No.5114T, CST), LC3B(1:2000, Cat# AF4650, Affinity Biosciences), Beclin-1(1:2000, Cat# AF5128, Affinity Biosciences), AKT(1:5000, YM8463, Immunoway, USK), P-AKT(Ser473)(1:2000, YM8304, Immunoway, USK), mTOR(1:5000,YM8208, Immunoway, USK), P-mTOR(Ser2448)(1:5000, YM8326, Immunoway, USK), S6(1:2000, YT4139, Immunoway, USK), P-S6(1:2000, No.F0198, Selleck.cn), p70S6K(1:2000, YT3559, Immunoway, USK), P-p70S6K(1:1000, No.F2907, Immunoway, USK), GAPDH(1:5000, Proteintech).

    Techniques: Western Blot, Quantitation Assay, Colony Assay

    (A) Genome-wide matrix of topologically associated domains (TADs) shows that most interactions are intrachromosomal (diagonal intensity pattern indicates each chromosome plotted against itself). A unique interaction pattern between chromosomes 1p and 7q (black arrow) was observed in KT-47R1 but not in KT-47PT. (B) Hi-C identified an interchromosomal interaction between chromosome 1p32.3 ( GLIS1 locus) and chromosome 7q21 ( ABCB1 locus, black arrow) in KT-47R1. The light red vertical line marks the boundary between interacting regions of chromosomes 1 (right) and 7 (left). Red arcs indicate interactions between chromosomes 1 and 7 in KT-47R1, absent in KT-47PT (no blue arcs crossing the boundary). RNA-seq reads confirm upregulation of ABCB1 (black arrow) in KT-47R1. (C) CUT&Tag analysis shows H3K4me1 peaks within the interacting region of chromosome 1p32.3. Peaks are present in both KT-47PT and KT-47R1, but the chromatin interaction occurs only in KT-47R1. (D) FISH 1p32.3 break-apart analysis demonstrates no translocation involving 1p32.3 in KT-47PT, KT-47 pre-resistance, KT-47R1, or KT-47R2. Scale bars, 5 μm. (E) Chromosome 1 and 7 painting analysis indicated increased interaction (colocalization) between chromosomes 1 and 7 in KT-47R1 (48%) and KT-47R2 (48%) when compared to KT-47PT (19%) and KT-47PR (25%). Scale bars, 10 μm. n = 2 samples per group.

    Journal: Cell reports

    Article Title: Developmental reprogramming underlies chemotherapy resistance in favorable-histology Wilms tumor

    doi: 10.1016/j.celrep.2026.117063

    Figure Lengend Snippet: (A) Genome-wide matrix of topologically associated domains (TADs) shows that most interactions are intrachromosomal (diagonal intensity pattern indicates each chromosome plotted against itself). A unique interaction pattern between chromosomes 1p and 7q (black arrow) was observed in KT-47R1 but not in KT-47PT. (B) Hi-C identified an interchromosomal interaction between chromosome 1p32.3 ( GLIS1 locus) and chromosome 7q21 ( ABCB1 locus, black arrow) in KT-47R1. The light red vertical line marks the boundary between interacting regions of chromosomes 1 (right) and 7 (left). Red arcs indicate interactions between chromosomes 1 and 7 in KT-47R1, absent in KT-47PT (no blue arcs crossing the boundary). RNA-seq reads confirm upregulation of ABCB1 (black arrow) in KT-47R1. (C) CUT&Tag analysis shows H3K4me1 peaks within the interacting region of chromosome 1p32.3. Peaks are present in both KT-47PT and KT-47R1, but the chromatin interaction occurs only in KT-47R1. (D) FISH 1p32.3 break-apart analysis demonstrates no translocation involving 1p32.3 in KT-47PT, KT-47 pre-resistance, KT-47R1, or KT-47R2. Scale bars, 5 μm. (E) Chromosome 1 and 7 painting analysis indicated increased interaction (colocalization) between chromosomes 1 and 7 in KT-47R1 (48%) and KT-47R2 (48%) when compared to KT-47PT (19%) and KT-47PR (25%). Scale bars, 10 μm. n = 2 samples per group.

    Article Snippet: H3K4me1 (CUT&Tag) , EpiCypher , cat#13–0057; RRID:AB_3076424.

    Techniques: Genome Wide, Hi-C, RNA Sequencing, Translocation Assay